ParkDB
Toggle navigation
Prefrontal Cortex Bulk Tissue Interactive Dataset
Comparative transcriptomics reveal molecular convergence and divergence in parkinsonian disorders
DOI: https://doi.org/10.1093/brain/awag153
University of Bergen gitlab repo: https://git.app.uib.no/decode-pd/ParkDB
EGA-archive: EGAS50000001815
Version 1.01
Research team website
Variance stabilized transformed data
Page explaination
Dataset
Dataset_1
Dataset_2
Transcript of interest
Plot type
Violin plot
Box plot
Dot plot
Extra annotation
None
Sex
Age
Oligodendrocyte est.
Neuronal est.
Astrocyte est.
Microglia est.
Endothelial est.
RIN
PMI
Differentially expressed genes
Page explaination
Dataset
Subset
Design
Disease
Set log2fold change
Set custom adjusted p-value
Average normalized counts
Protein coding genes
Non protein coding genes
Genes without symbol names
Download
Overlapping differentially expressed genes
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set log2fold change
Set custom adjusted p-value
Average normalized counts
Protein coding genes
Non protein coding genes
Genes without symbol names
Ensembl_id column
Gene_name column
Gene_type column
Concordant log2fold
Discordant log2fold
Significant in both
Log2Fold column
log2fold error columns
Adjusted p-value columns
P-value columns
Stat columns
baseMean columns
Download
Enriched pathways by ranked list
Reactome
GO
KEGG
KEGG Medicus
Wikipathways
Mitocarta
DSigDB
TRRUST_TF
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Page explaination
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Show leadingEdge
Download
Overlapping pathways
Reactome
GO
KEGG
KEGG Medicus
Wikipathways
Mitocarta
DSigDB
TRRUST_TF
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download
Page explaination
Number of Columns to Show
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Dataset
Subset
Design
Disease
Set custom adjusted p-value
Set ES cutoff
Set NES cutoff
Concordant NES/ES
Discordant NES/ES
Significant in both
NES columns
ES error columns
Log2err column
Adjusted p-value column
P-value columns
Size columns
Leading edge 1
Leading edge 2
Download